Scaffold Ga0310122_10024505

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10024505
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3462
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020469	Metagenome	224	Y
F023247	Metagenome	211	Y
F051571	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100245053	F023247	AGG	MTLSTGPSLNFFGDHMFAWSGQKQLTAGSTTLLDFISPNRYYSVVTNVSFDYSGCSAGDVLSWTLQGNEEALHVSKFIIIDAGIGPQFPNLYYTIPPNTGMKVLATGPTGSMTVVVEGKEVQ
Ga0310122_100245056	F051571	GAG	MVRRRGNSRRRAPRTFGINVIELGTALALISQVNAGAAAQSFLAGNLNAGLSTLSKAAKSNKQVIIKTLIGSMVAKVAVKTLSRGSPVLASLGPIKVRA
Ga0310122_100245059	F020469	GGA	VVISALELLGYFIAWSLFYFGISHYIAKLSKDKWVEWAKSSESDDDLLIILEPIVDEIEGRTHEMLENFQSSFFGSLGAASKKMDDATGQSTIKAITKDNPIMGLVAEMLMKRSGIEGLLNTQNNPEVGGKQSQKSPGLGLK