Basic Information | |
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Taxon OID | 3300031800 Open in IMG/M |
Scaffold ID | Ga0310122_10023654 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3538 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 3678 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000245 | Metagenome / Metatranscriptome | 1468 | Y |
F002715 | Metagenome / Metatranscriptome | 535 | Y |
F002745 | Metagenome | 533 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310122_100236542 | F002715 | AGGA | MPEHELQSVKLEVGLLKSEVEVRGKQIETLLQKLDLTADKLQELTVQIIKLNTRQEDYLRHSSTMSEEFKILHTRIGDLHDKQLAAHKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD |
Ga0310122_100236543 | F000245 | AGGA | MKTFTRFKESKLDDKLDKIVSNEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPTGGEMMIHVYLKPMKGKKGMMAFNYQLEDK |
Ga0310122_100236544 | F002745 | GAG | MKSFKGYLTEFAIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATEGGGIVAEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERAKFSKIEKDLNTLITDLVKKHIPKDKEIQQTKHFGKDSGAVFEIWGNMKKHLKGDGRKIAAVIKDYFDGVEKIIKKNKEVMGDIFYGYTKSKRMTDNSWDEQIVNNIDIYKIHVIKPHPSSDVWGPDEIKQHITDVHKWPMKVWDVAIDLEIYTREVVNAEIRTMGT |
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