Scaffold Ga0310122_10022853

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10022853
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3614
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019228	Metagenome / Metatranscriptome	231	Y
F025386	Metagenome / Metatranscriptome	202	Y
F054945	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100228532	F019228	N/A	MKRKRVGKRGRNGWRKRNPRCMLCTSIRWMGNIKGRHPMRELKQLDKEKHDKRMEMY
Ga0310122_100228533	F025386	AGGA	METSFETETKNKTANTWAGFWYMIFITSIIVAVWGEPDLIDAWIYHLSDGYYK
Ga0310122_100228537	F054945	AGAAG	MKWVILIYLAMWTNTPEVMKYTVLEFPAHDYYDCIDIAEEINDIETAYNSKTAYVRSFYWVYNNMLDEIKAECVFADPTTPLPKWYEFYDVKGNIK