NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10022610

Scaffold Ga0310122_10022610


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10022610 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3636
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004768Metagenome / Metatranscriptome424Y
F016284Metagenome / Metatranscriptome248Y
F024883Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100226102F016284AGGAGMTSKTLKDMRKELLDKYSGKMTGYEHLDDGTGDYAKTIPKDSEKEFEETSEKT
Ga0310122_100226104F024883GGAMKLKKRKISKVWKEVLDTIESFKDNPDYAPDPDHVQIYITTKDGSIVELHIGYDGEQEIRKTFDLFDSEEELEEQRIIERMEDPEGGILLN
Ga0310122_100226105F004768GAGMKKATIEILEEGETIFGSRTNGEYFVRVYEDEEEMGGGFFKTMGEAEARVREYQKMET

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