Scaffold Ga0310122_10022610

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10022610
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3636
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004768	Metagenome / Metatranscriptome	424	Y
F016284	Metagenome / Metatranscriptome	248	Y
F024883	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100226102	F016284	AGGAG	MTSKTLKDMRKELLDKYSGKMTGYEHLDDGTGDYAKTIPKDSEKEFEETSEKT
Ga0310122_100226104	F024883	GGA	MKLKKRKISKVWKEVLDTIESFKDNPDYAPDPDHVQIYITTKDGSIVELHIGYDGEQEIRKTFDLFDSEEELEEQRIIERMEDPEGGILLN
Ga0310122_100226105	F004768	GAG	MKKATIEILEEGETIFGSRTNGEYFVRVYEDEEEMGGGFFKTMGEAEARVREYQKMET