Scaffold Ga0310122_10019649

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10019649
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3951
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002030	Metagenome	601	Y
F038419	Metagenome / Metatranscriptome	166	Y
F049705	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100196491	F038419	N/A	KKATIIKLGQMIITTSTMMLVQAIIVTWIMMTTPEPCPQEYLTLGGDVTEYCELTPAGLGNQWSLKEE
Ga0310122_1001964911	F002030	AGGCGG	MIEFLIFGLVVLSTVCLWLLIEGRKSPKFLIWFIPILLVLVTSTYVTYTSILGFPKVSTPERGMYLRHYIDEPNWIYLWVLSKNNVPMSYQLVYSREKHNSLEGVKGKSEEGKFMVLGEDEVLGPGDGQGGKEGERPGEGYTIGGDMSFYEWDFAENMPQKKPKEEEK
Ga0310122_100196492	F049705	AGG	MVFKGGMIVILMLVSCSYDTKIVCNYRWHHEMTMKKLMQRCNYIPYGDVWVKKQGEEWSH