Scaffold Ga0310122_10015500

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10015500
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4540
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F013775	Metagenome	268	Y
F037260	Metagenome	168	Y
F081450	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_1001550011	F013775	GAG	MVEKRQYETIKEFAKDYRTEIIPMLKSKGFTLSINTSRGSYYQDGRMNFVIKKIPSNFYVWTNEYSRYNKTEKSQKLLNTIRDRVKKLIILTTTHLDVDLNFDYHKDVRYKPIPEGWDDEQNS
Ga0310122_100155002	F081450	GGA	MTQFEEKSCKVLGVILFLLVIMTWLQISGCYSPPQPEMEGEPFPDYIDDVEMKNLA
Ga0310122_100155004	F003091	GAGG	MSMLPQKPITKPGEGKGAQRQKYLSEERYLEERWDISLGLKGPKRLEGESYEKYVIRRKSENGLLKEYRRGVWIKKKD
Ga0310122_100155006	F037260	N/A	MAKKKKSIPFHEKHNYKKWTSDQGYKFWAKDEEDAKLYLEKTEGNLGSLKEVEVKDV
Ga0310122_100155008	F005749	AGGAG	MKKSWLLIMSFDEHDGSFNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEIDKKSTYDKIVDKEDSEEMFFMDSKRNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA