Scaffold Ga0310122_10011632

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10011632
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5357
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001712	Metagenome / Metatranscriptome	648	Y
F001922	Metagenome	617	Y
F003616	Metagenome	477	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100116321	F001712	N/A	SQWGKISKGAGVLAFLSNVTGSDMAASTGQPIGARAQNFGNSLLGRITGFTPFKNAAGANIPQTISIDGIFNKWSGIGAASFIYGLLPLKALPHKGKAKTLGKSLLSAGILSGLFMPSGNPHTTNLLTSTPAITVSSSEVSYT
Ga0310122_100116323	F000704	GGTGG	MPHLNGEIQPSNVKAVAVYDIASYGTDLYLPLTDVGLTETALTFSTVTMTRDTSDGNQPLDSFPFVYSDTDSGLLLNEGSNTAFNQTYTLDPDMSAILYKVSLNFCAVLTCSLYTNGGLNIGGLHIKISERSSNDRLLYENTFQSGAATLSATGTSMHWFTQDIVETIKVRKGNPIDIQLNLVTVVTGTNTRQEGYAPLAPYHKTAVLKSFTPSGISLHLHPDLSHADGVFKYKKDRISLLGQGG
Ga0310122_100116324	F000730	AGG	MVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKEQGSVHTDSQIDDLINNAPRILNEINKQIKEQELSGVTPDQMKGLLQKKQMLELVTNNAEVINIIGKPIIKKLLGLVKSL
Ga0310122_100116325	F001922	N/A	MVFEKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFQATIQGGIWLNSLAGFIGVKFPDTLPDWTVKLFTTGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKQNNSQPNVTTTAVFAMIGLGLSLITFPQIVQKIKEMRIINGPK
Ga0310122_100116328	F003616	GAG	MIWSEKLGHEIGTYNSLGGLRINPKPFRQSTENTIVTCYICKGVGCNAITHPSGLVTLNPCVLCKGVKRRSNRI