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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031800 Open in IMG/M |
| Scaffold ID | Ga0310122_10011035 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5516 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 3678 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001922 | Metagenome | 617 | Y |
| F002744 | Metagenome / Metatranscriptome | 533 | Y |
| F003616 | Metagenome | 477 | Y |
| F038477 | Metagenome | 166 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310122_100110351 | F002744 | N/A | PKKFVLPNINTGDGSFTSVQVPALLAYPINTPLAGGEHLNFYAQPLTSNIVAPGVGATVIYSTDGTNGAEQYYTRPSSATAGGTAINTRTTGGDMTIQGGNEITGLYTVVSGATATASQHTVGYSEFVSPDFNTSMPYRIAVQPTATALGSNANAETGGDGLMKYEMPRGQGIPLANNVTITNYYTNRDARTGADNFINFVRYSKN |
| Ga0310122_1001103510 | F038477 | N/A | VHPHVSGGLKKVFDFFKSNEIPRDILISVGSAITGALIFDRILRRNEDEDEDE |
| Ga0310122_100110354 | F001922 | N/A | MVFQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINAYFQASIQGGIWLNSLAGFFGVSFPTTLPDWTIKLFTTGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKQNNEQPNITTTAVFAMIGLGLSLITFPQIIQKFKEMRILSKAPRTDVTKGFGGESL |
| Ga0310122_100110357 | F003616 | AGAAGG | MIWSEKLGHEIGTYNSLGGLRINPKPFTHSTQNTIVACRICKGTGLNAITHPNGLVTLNYCVRCKGVKRISNRVPP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |