Scaffold Ga0310122_10010819

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10010819
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5569
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047901	Metagenome / Metatranscriptome	149	Y
F076479	Metagenome	118	Y
F105323	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100108195	F047901	N/A	MKYYRIRVVVQGQLYIETIEAKDIWAAFKILIKRAADGLVKVKETVGFYQRKQVQITYEEVKDGDSGTGANEVRPGTQVGKEGFDIAT
Ga0310122_100108196	F076479	N/A	MFGHICIENSGPFDKCWNIYHTPQIRYSSERTCMKAARDYLDGAQVYYRKQDVTVSELELYCIGINPINPV
Ga0310122_100108197	F105323	GAG	MNLKSKSTLFHTIIERVDQQLAGIPLNDSEGAPLEDSTDLDMHIDAIKEMKLTNTKGDIIRPFSTAVATQLVYDELTEKREQSNGDKWHE