Scaffold Ga0310122_10010794

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10010794
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5576
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018739	Metagenome / Metatranscriptome	233	Y
F025303	Metagenome / Metatranscriptome	202	Y
F101353	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100107942	F018739	GGAG	MTTQNYEPTLDLVKERLEMIDKIQKKFKHFPDVQEKLQGAKDAIVKSEKEIMSYYDITDLEKHDLN
Ga0310122_100107943	F025303	AGGAG	MEKNVDYFDGKAESEKMRNVANMVHDIVNAKRNKPELEVTAEEDAPEEPEVDPVVELVGKALSAGKPKGFFMQGVQTDDNPKL
Ga0310122_100107946	F101353	N/A	MKTFRAHISEAQALFNTRSMIFVNYETPALILSPTMIDRIFGQKRVDAWHVTDLAGLKGLKRIEGKKSSISVLTEIEPGRVKIFTMGVETGGGYCVSLEGNLLLSADFDVYSERLESGRRAITVSKESFPSLYKDMIKMQDKMWNKYGEKGKLDAGQDFNKLGNSLDQKQKGQFIKEWIDNCEAILKKNKKAQEELRKIGRHELSTYNESVVNQIKIKRVYVINDNKIEKFGMRYELAKKMFKDVLEVTSKRMGEIIK