Scaffold Ga0310122_10005107

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10005107
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8214
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024444	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100051075	F024444	AGGA	MVAPVAAAGAAKIDPTVLLIGAGALLLLTKWGIGNIPNIPNPLPAAGRAIAKTADELTGGLQKDRDESVTEYLFEYDVPFSDKRLPFMPGLVRERGDVYTTEGPGPGGQMGDVPWMAMDVAEPDQPWGKYFFEIDLPGVPAYDVRDAPADLYRSTIGRVLR