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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031800 Open in IMG/M |
| Scaffold ID | Ga0310122_10004078 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9228 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (54.55%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 3678 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033842 | Metagenome / Metatranscriptome | 176 | N |
| F054107 | Metagenome / Metatranscriptome | 140 | N |
| F066859 | Metagenome / Metatranscriptome | 126 | N |
| F078831 | Metagenome | 116 | N |
| F081448 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310122_1000407812 | F033842 | N/A | MTILTDLTKPSKLIDKAKLGMKGAAGYAAATVALEAGTQLLERFVLDPYLPQAANIMNTVITNNAPGLGTIDVRDAIVLLPAEQQVYAMLSKKDKQNHFINALSSYVTKIILRRTGLNPKEIADKAEKVITPRTMLPSVM |
| Ga0310122_1000407813 | F078831 | GAG | MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSITINGLQNGGSVPTIANALGLVNPLEIDVGGIPQIRLRLSDMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTNADNTEISITSEYLDGIPRNEALYYSEFSRNTDGVDSSSFGNWTQTSNLVGNMTGMLFNSTTIPGGSILMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDIMAGVSAEAVRTVQMQQVPFRGR |
| Ga0310122_1000407814 | F066859 | AGG | LVHELPDSNGRVQTGINTSRAGYYISNFDVAETVTLTPQGGGTIDIVLPPGAKIAVPDKIGMIAQGGNSSRNYVFLMWTAGYAS |
| Ga0310122_100040786 | F054107 | AGG | MKKELSKIQIENKERVRKEVQEKEPKVNAAAGNFVNAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLVNTPPPEVQGSEAERNQPMTKGDFFQIIKDGIQLLRQQTQGVDPRIERAIDMQDKLVDAMWEKMARALISDKDTSPGVN |
| Ga0310122_100040787 | F081448 | N/A | VKALDVLTDIIKNKNLAKEYALQESKDLRILSPKKDTALACLLSGIESVETIPTWVKTSWFNWIYYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRPAAEALLHPHLLKLKGSHTTMEETLKEWRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |