Scaffold Ga0310122_10003966

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10003966
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9348
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F005464	Metagenome / Metatranscriptome	400	Y
F013649	Metagenome	269	Y
F039182	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_1000396617	F013649	AGGA	MAALPKETILERLPSSIRMREHDEVGKITKKLKRPKKEHFTKDWDKDLWD
Ga0310122_1000396618	F005464	GGA	VGLKNENIFRAAGWLLSLLCISAGTYFLWPRIHIALLGIALIYLGVRIFNFSTFKEYEESRRKLLLKLLK
Ga0310122_1000396620	F005400	GGA	MKKTDMTHSDIERLQLGKNWMGFKDLTDTNMCYRCDYCDQGYNQLYWLHQIAIEYFICDRCQKYYRLTAKDLIELKYVQNREEWQDADCWPNKGFFPYPIGFDE
Ga0310122_1000396624	F039182	GAG	MKWIFIIAIALSLNGCADTADAEDSTVTTPAEQQQEEDKEVSDDTIWAAIVMTWNPVVRTIDKEFASEVECWDYYENGVGESKFGSQHLDHQNNPPTKDFNFGPDYLEYPIRTYRGKDGSGSIWLTCDIKGRYEDL