Scaffold Ga0310122_10000027

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10000027
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116086
• Total Scaffold Genes: 135
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (52.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050421	Metagenome	145	Y
F059334	Metagenome / Metatranscriptome	134	Y
F079211	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_1000002712	F059334	GGA	MIVKVKLDDWAKNKLKNRMGWTMLAGGADSLSPNDLIILSLISKEDGETMDLTEEAGKLKKLFDKHS
Ga0310122_1000002755	F079211	N/A	MKKKMKTYKVEFRTAFAGSPFVPIVLEAKDENQAQWVARNLCRFGYISAAPVVVDDEPYYTEATHDWAYDENYEVYS
Ga0310122_1000002765	F050421	N/A	MIVENKQIKVGDEIRFGMQLMIVDEITEFNTIIAVDEDGQDLELTENEIDIY