Scaffold Ga0318576_10001644

Overview

Basic Information

• Taxon OID: 3300031796
• Scaffold ID: Ga0318576_10001644
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6765
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001249	Metagenome / Metatranscriptome	737	Y
F016044	Metagenome / Metatranscriptome	250	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318576_100016442	F001249	N/A	VENGALSKSHVYKLLRSKDARVRRAAFTLLETSNPRLRRNSELFIEITRFIWDANPSYDVYQEFTKRHFQARYKVHELIGARLKIEKRKQQAAAVEELTGNACRCEGGFFQRLFLRPSRS
Ga0318576_100016444	F016044	GGAG	MGLTLRPPGLGPPAEKDRSDYTLFSGEFAVGRIYEGRGAPADLKWFWAITGIFGTPAHMRMDGHAPSLELAQAQLAESWRKWLVWAKLAEIEG