NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318548_10604666

Scaffold Ga0318548_10604666


Overview

Basic Information
Taxon OID3300031793 Open in IMG/M
Scaffold IDGa0318548_10604666 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005183Metagenome / Metatranscriptome409Y
F033581Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0318548_106046661F033581N/ACWAEHTTEHDDLRRVAAIEFQPGLDCYKALCDAVDPDDEFSEMEFKRYLFGDESAVLTNEYLAAFIEGARQFFLEGAPKT
Ga0318548_106046662F005183AGGMPPNFVLLDATLPDVARLVTAILQAREAIDRRSWSHPQEPTGEAWWADVLADPRARKRERRTDLAVKQAFYRLADEMRGTILVACSKCDW

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