Scaffold Ga0318529_10540977

Overview

Basic Information

• Taxon OID: 3300031792
• Scaffold ID: Ga0318529_10540977
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 541
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023920	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318529_105409771	F023920	N/A	SGASPDTFDGDVISRADREFLASLGDHPLMRHPLYSVPPPPRPNYNGCISVADRQAAQEACFPAALDWMLVNYAYYADAFMGKGGIISLVDGKIGTIGSLKGFMQLYTIAAEGPRGGLKKTSVVEAWIGHPSRAHIAAVQTRPDKPRPTFEEDGLTVYNRYWPPAHPTSGGEIGTFNTF