Scaffold Ga0315900_11100881

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_11100881
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 512
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Aeromicrobium → unclassified Aeromicrobium → Aeromicrobium sp. Root472D3 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045088	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_111008811	F045088	AGGAGG	VGYRTFTEEQITEFIETAKEMGIGPTLRYLQYPKSYHTAKKWFVERGLEMPTIDTLAKMAGDLRVFYTDKEKLIAAQAVLDRCVEALMQDVLDSDGLNKLANAVHKAIQTINLIEGKSTVINENRQKDGQDLAIVDLLNEAKMRN