Scaffold Ga0315900_10316863

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10316863
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F034908	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_103168631	F031359	N/A	IVEQVVVTGYVIHGNGRKTPFSFNKNDLKPNDLLGIFDGIRRIFK
Ga0315900_103168632	F029418	AGGAG	MTQHQKNEEKKRKFEEDIIEVAVAEYYHYVDEHKRTRSEKDAKMFYDAMRLGIVRGINYATNQYMQSLKNFEEAKKNETEHQDKPNQV
Ga0315900_103168635	F034908	AGGAG	MKKFSVVVEVLMDENYLKQVETWKVEPSDHITTIIAEPMREKGLVVKCSALESDHTLYERLVKYRDHLVQADAYNDLENEIISRACIGGVCED