Scaffold Ga0315900_10252762

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10252762
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1504
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F036551	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_102527621	F036551	GGAG	MDTMDILRALSTEARECEICGSGSWRILHAGDESNCECEGECLRVCDNPLLEYGCDGVAILINEEASK
Ga0315900_102527622	F003212	AGGAGG	MKDRYLVTLEIETYDGDPRWWDWENLSTGEDVIKVIESQWQGRVLPKSEGESNE
Ga0315900_102527623	F000821	GAG	MQTVQKEKVMNREYLEAKFDLCINEAEKDLQQEEIARAIANLRRANSALSQLFGFEEEDKSE
Ga0315900_102527624	F001477	AGGAGG	VSDDRVLRILDNGTKFMGDSNIYTIHPRKSELILLYEVVDESGRAEWGGANAEHAIQWLSLAPREARILVSAWDSDEEDAHLVGQTIDITDIVRAASL
Ga0315900_102527626	F003863	GGAGG	MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKTWIINPDSRLTVGVHTRANNTPAVGDPANAGEDEGNNGGKA