Scaffold Ga0315900_10222525

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10222525
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1644
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005585	Metagenome / Metatranscriptome	395	Y
F013317	Metagenome / Metatranscriptome	272	Y
F056572	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_102225251	F056572	GAG	MSNYLDDYVSVQDRLKEFINGYPDYRIKSHVLEESLIPTCDVYIVKVELYRTEADSAAWTTGLSSESKSKQYALELAETGALGRALNLAGYFAKPSGTPKKPIQTT
Ga0315900_102225252	F005585	GAGG	MATRGTIYYAFTKSRESSVFSSETHLSWRLFLSRPNSAEWWKVQSAKIRISISLDTPLSWASADFLHLKIGTTLSLTRNTNNRQWCDYCKSRYGQLKDGTWHLKAQVPAVWKVQSETPLRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0315900_102225255	F013317	N/A	RARTGARTLYINATPKGVYQFDLGALEAPEWHWKALPDKTDFANAGKVHKLCAFLPIRLAELLLV