Scaffold Ga0315900_10200638

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10200638
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1767
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002386	Metagenome / Metatranscriptome	565	Y
F004667	Metagenome	428	Y
F009514	Metagenome	316	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_102006383	F009514	AGG	MTKQQILALQSIGKGIIEAANIDSIGAPSGIIYSALMSHGATYNQFKQIMSTLERHGFLSHDVEANTYHATDAGLQWAKKVH
Ga0315900_102006385	F002386	AGG	MKFAFIPKGQYKIGQYIQVHGKTMRIASYTHTGRNVIVQSLFGASKFEQIVCICTDSPSL
Ga0315900_102006386	F004667	AGG	MARPPKVDTVQFRRKLDNPKLQILLSAGQGNISQGFENLLALYQHLHGIGYRTDSPLESIGLVTNLDEKKRDSPNHVNQ