Scaffold Ga0315900_10143895

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10143895
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2219
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_101438952	F085348	AGG	MTPTGIALKVTNKDGKVSYPCYEAYGWERVNAVINGTLAIEHVAMVEIVDINARG
Ga0315900_101438953	F003212	GAGG	MKDKWLVTLEIDTYDGDPRLWDWEKLSTGEDEIKIIESQFKGRVLSEEGESNE
Ga0315900_101438957	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWVIDSNSKLTVGIHTRANTPPPFGDPSDAGADEGYDGGEA
Ga0315900_101438958	F017972	GGAGG	VRTRHLQLVSQEHSVTTTTRSIVSSPFGPVSPGSTTLLAQETLRANQEARLLELLSSLESVVDNLNYKSFTAYDTLVIATEGVRVALSNIVTDEAGTKSC