Scaffold Ga0315900_10125245

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10125245
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2435
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_101252452	F007110	GGAGG	MNCVYCKNCVGVDRYEFLVETGRKIICKDCSMENRAVGFMDWGHKTAPSLVMVPANAKETIRILDRANRRAR
Ga0315900_101252453	F007305	N/A	MKIINKTIRKAYQNWNPNRLIRCYHYAAAFDGTKLICFTQNNPIKTHTGAYRIGEEFNLSKYKEYPYYHSESRLISKLLDQYNTIDPNWSVVVMRINRKGLVLGSKPCENCDKLLNAVGLNSIYYSNDDGSFSDSIGNNIQAESLTLPMTMV