NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10120369

Scaffold Ga0315900_10120369


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10120369 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2501
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F009883Metagenome / Metatranscriptome311Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_101203691F009883N/ACLIAGALWAVMSYSVGFKEGQRQGYTRGRAVSRHISQLNEKVDN
Ga0315900_101203692F012452AGAAGGMAGFLENYEGNKERTDRWIKTFPNGRLEAHIVEFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAFNPNMKRWFCEDTTTSALMRVMALVMGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCDPLWYVFTSRGKWEPQV
Ga0315900_101203693F000403GGAGMSNYVEIIYPQEMMAKLMCNGEIVEEYKIEQCDKCSQLRRLDKFGYQKGYDSKDNIIWFCGECR
Ga0315900_101203694F000903GAGMNRIEEIQCMVSAIEHCQDRDADHATRWHKTPSWFEYVAQMAESMAAEWTVAKRLGYDYVPGTTWDKSKADVGEHIEVKWSANPDSNLWIQDSDRHDRDIAVLVVGQTPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPSI
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