Basic Information | |
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Taxon OID | 3300031787 Open in IMG/M |
Scaffold ID | Ga0315900_10071934 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3511 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002540 | Metagenome / Metatranscriptome | 550 | Y |
F003377 | Metagenome / Metatranscriptome | 490 | Y |
F012767 | Metagenome | 277 | Y |
F083632 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315900_100719341 | F012767 | GGAG | MAGVTATISVTAFRADWETHMPIAALCQRWTISKDQVLRLRDVWHLPLRNDRRLRFKPKRCDMRDPTPREIIQACKEIQAKWDARTREERAVIKTQHVSLRRIEMTDEAREAFGQFEDE |
Ga0315900_100719343 | F002540 | AGGAGG | MSMPNYQGTADEYAKFGPMLNVWQQLALLQAWAPLIGYGQRFVNEIDPYRKSLVVSDAAEWLASKTSAQVDDQLVRLLADILKTKEGENLVRFLLLQAEAAK |
Ga0315900_100719347 | F083632 | AGG | MSLEDLDAYVWSQLSPRRYAAGRPLVARLTKRVVRKFPHLVMSQTRPESYDMVMHEIARSIERSERQNYGMGIILTLVLSALLSEIVKAVLRWWLQSASHRALLLGWQTEMRK |
Ga0315900_100719348 | F003377 | GGAG | VTDEVKGTLFGIMERWGFPTLVAIVAMWVLRQDVLLPLVQSHKQFVEQLGETQQDISKAIQEQTRLLYAMQPGRSAAAHMPDTDAAN |
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