Scaffold Ga0315900_10058772

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10058772
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3993
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F016263	Metagenome / Metatranscriptome	248	Y
F100733	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1005877211	F002827	GAGG	MNKEYLQAKADLCQKLAIQQMTEGNAKEAGDNLIRMVNALNQIQLINYQEEKKNG
Ga0315900_1005877213	F005146	GGAGG	VKLINFYEVMNYKGDIEWGGASASEAIKWFRKGFNNSIFVSVWNEEDIEEPVLVTDKIEVTNLLLSLLVSEREEYYPKPKKEWAR
Ga0315900_100587725	F100733	AGGA	MREKNTETRFACSCNGCRNYPTRPAEVWHEAQIPSKEQGTFYFRKDTMRFFSSRIVDFKPVRRGGEIDSLTVIVSSRHGYEGASRYYEVVTLCPYGTIHREGESFESLRKARKEWDNAVAGFAPCSCHGCQLDAEAGA
Ga0315900_100587728	F016263	GAGG	MSKCGVCGWSFSDRTLMKHAETPCGEESEKAGRMSYAPEIDDLIKIEEEQGDE