NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10058772

Scaffold Ga0315900_10058772


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10058772 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3993
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F016263Metagenome / Metatranscriptome248Y
F100733Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1005877211F002827GAGGMNKEYLQAKADLCQKLAIQQMTEGNAKEAGDNLIRMVNALNQIQLINYQEEKKNG
Ga0315900_1005877213F005146GGAGGVKLINFYEVMNYKGDIEWGGASASEAIKWFRKGFNNSIFVSVWNEEDIEEPVLVTDKIEVTNLLLSLLVSEREEYYPKPKKEWAR
Ga0315900_100587725F100733AGGAMREKNTETRFACSCNGCRNYPTRPAEVWHEAQIPSKEQGTFYFRKDTMRFFSSRIVDFKPVRRGGEIDSLTVIVSSRHGYEGASRYYEVVTLCPYGTIHREGESFESLRKARKEWDNAVAGFAPCSCHGCQLDAEAGA
Ga0315900_100587728F016263GAGGMSKCGVCGWSFSDRTLMKHAETPCGEESEKAGRMSYAPEIDDLIKIEEEQGDE

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