Scaffold Ga0315900_10054787

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10054787
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4173
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009505	Metagenome / Metatranscriptome	317	Y
F079389	Metagenome / Metatranscriptome	116	Y
F099192	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1005478712	F099192	N/A	LAGIACLAFFIYGLGQVIFDETEKSQVRYEQCIAADKQWVQGSCVK
Ga0315900_100547873	F009505	AGGAG	MIGRMIGMMIGRKAKEKVVDAVLDKVNLPDPVENAIRVAATGNVGDLLGGMGKDMAREAVLDTVTKKVPIKRPKK
Ga0315900_100547877	F079389	AGGA	MAPPRRHITKDMLIACREKGWHLTLAAAHLEMHRSSVAAACERFGIVLPMHNFSPQRVSPKSKVWVDIIDGETKPKVKLSASPSAIQRALDDIERQKRLRAFG