Scaffold Ga0315900_10051223

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10051223
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4352
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024768	Metagenome / Metatranscriptome	204	Y
F038911	Metagenome / Metatranscriptome	165	Y
F076003	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100512235	F038911	GAGG	MVEKVKFVSVTRVIDDRKGIHYLDAVDENGMHWSAEMDNKQEKWLVYSKLWTRDPQQPYD
Ga0315900_100512236	F024768	N/A	MTLYANLLMEYEIIDGRRAVVRHIFKAHEIQVGSRWARADGSKGFVTVEGFNTYGDTDPWIEVVYSWEENGVKKTWQKENFIFQCRYCLIVED
Ga0315900_100512239	F076003	GGAG	MKLTAHQLAVIIDTINHSLMISNWSGHYTAKSRENVRDLIAVIMNEMSVEIITDKANFIIDADAGI