Scaffold Ga0315900_10047648

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10047648
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4554
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029105	Metagenome	189	Y
F051918	Metagenome	143	Y
F093233	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100476484	F093233	N/A	MHTCPELLGVYLGKIQMRKQIKITEVYLQSEYFNHRLNCTIPAAWIAVFNNGHEVAICREWEASTAEDAQAYYEMHHVEYA
Ga0315900_100476485	F029105	AGGA	MIDHKLQYYFDDVVSYDNGNTVQNVKVGYDYLPAQHNHPYDYDYAEMFDVFVFDQQGNHITYDIPDAEYKRIMQKAKANFVQIQRDCNEI
Ga0315900_100476487	F051918	GAGG	MINLLKNYLRLPSAKELAANELEMAHRKLLVALSAQEYAKRMCDYHSDRIKRLTAYLKDE