Scaffold Ga0315900_10033696

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10033696
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5645
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F022861	Metagenome / Metatranscriptome	212	Y
F042298	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1003369610	F022861	AGTAG	MRAICIDASNRPSKVPDSEWIVEGEVYTITRVVRMGLQDNKFGVLLKEVKLSAESFPYELYDAERFLPIDLLSQALEETKETVKEADLELI
Ga0315900_1003369612	F042298	N/A	MGRMKEAYIQLMNDNDGIPEDMTLGDLIRMKELNIYNWKEYERAQERTRLQSYKQTDLGETAKDSEGESIRRKENN
Ga0315900_100336964	F010462	N/A	MPVMLYQLPNGKVIHLTIEEFLDLTDQDIQYLMSIDFGEHIRDPFTGSAVEKNTREKYIDIEFLPMEDYDLNDIPSDESPFDDIIDLEDPLDN
Ga0315900_100336966	F000716	N/A	MEKLKQEIRNYQLNAGKTYMQYEQDKYSIYQNYLYKRALYGLDSLTEKELTAMCGKKKQRILNVYKRAQNVLNIFKQKVAIKYTNDIFKSLFPNSDLTKEIVSFDYTDEKFKNTLTFKDLNIGKDQIISIFIAEGILPKNFLSLKEAPVSLPSLKNESQA