Scaffold Ga0315900_10029762

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10029762
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6104
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012767	Metagenome	277	Y
F098633	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100297621	F012767	N/A	WTISKDQVLRLRDVWRLPLRNDRRLRFKPERQRDPTPREIAQACRELQAQWDEATREARRVVKSQPVQMRRVEMTDEARQAFETFGDE
Ga0315900_100297625	F098633	AGGTGG	MTFADLQAECWAALPPIRKRLAGRQAVDDIVTLAVENWAGEYLNACQDNDQRGVYVTALLGQVKRGHQVLSGKEPQEYGFIWVFLLQAVAVAAIEWLVKWWLDRRANRVLMTVWQHELTK