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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031787 Open in IMG/M |
| Scaffold ID | Ga0315900_10020754 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7629 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (21.05%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001775 | Metagenome / Metatranscriptome | 636 | Y |
| F029443 | Metagenome / Metatranscriptome | 188 | Y |
| F047062 | Metagenome | 150 | Y |
| F048316 | Metagenome / Metatranscriptome | 148 | Y |
| F049637 | Metagenome / Metatranscriptome | 146 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315900_1002075410 | F001775 | GAG | MEFSTDNQKIRIAILAFIAGVILAFIVFPRPEQETVYKFETKVETDTIYSHVVDTVYVPKMRIKSQILRDTILIDYKPKISLFKTSIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYLGAGVNSLLDPLAKVSYLDNKYLFEYSYQPVTKIHTLGVSKKLF |
| Ga0315900_1002075416 | F047062 | N/A | MNYETENFHDQEITFTYEGQDYLWIGDYTIEHFGEDESEFAPAYGEMEITIDYTRSLSSYEHGYEVIPTRSMLMELELEIERNY |
| Ga0315900_100207543 | F029443 | N/A | MTLVDLVKKIKAIQEAHPMIRTFGEGDIYDYVDNGGEIEYPVLWTVVRPSVYNGTTLRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNSYTFNTAPNAAIEFFQERFDDFTAGVSIAIQVTAPMPLNLCVIPTIA |
| Ga0315900_100207544 | F049637 | N/A | MNILKSDELGVPSTLIAIFANVSQVIGLSFVNMFFTWIISILSIIYLIYKIKNEKGKFDQKKNEKGK |
| Ga0315900_100207546 | F048316 | GGA | MKNFFNWAKGFLSEGGEASSKRLVGVLSGITLCCALFLNQNEPLVYSVAALSAAALGITAAEKIFKKPNNNKNEDQSTS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |