Scaffold Ga0315900_10018128

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10018128
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8273
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1001812814	F098924	N/A	MNVLGKLFNKKKTYPKDNRFEVLIIGEDKSDFQEMLGITDKRKEELVKLALISYKNENLFTSACKLVVAQCTHINEVVFVMTVLTKIREVESNPLSLLLGSIDHGE
Ga0315900_1001812815	F096905	AGG	MESKIFTSVIGFNFELDLVDNDGELIKTGAKKVKNYLPSETPSVGTKIGGENWFTNFNEPLLSKIRDYRRLND
Ga0315900_1001812816	F049561	AGGAGG	MTKIKLELEETDLFNAIKKIIDHPNRVEIAKALTSILAPNERLSSIFFKTYFGSSAPQILPEGTMITVNPRDLSYKANIDGMKKLGLLNISGHATAIVKEFKGFHDYTTYIVNFMNVDENNKTFEDTGFIAYNQVESIIEEL
Ga0315900_1001812819	F000716	N/A	MYIMEKLKKQVRNYQLYAGKTYVQYEQDGYTAYQNYLYKRALYGLDALTEKELATMCSKKKQRIISVYKRAQITLNKFKQQVTIKYSNQIFETLFPNSPITQFLLADTEADEKFKNTLTFKDLGIEKKDIIAIFIAEGILPRNFFDLKEMPNQLPRLKNEVKA