Scaffold Ga0315900_10013666

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10013666
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9868
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F012346	Metagenome	281	Y
F018910	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1001366619	F018910	N/A	MKNLITEEFKEKFKAAFARFMNITIVSSTLIAGFGLGYYFQELKMKPKAVNETILNKEVRIAIDSEDKLIMMDRKTGGYTIYSDSIGRIIFKMYATKIASPVVIK
Ga0315900_1001366625	F012346	N/A	MIFGFYYKNDKKEEIISRTISSSRLNAAKYFAARKQLELKPFLKVFGVKTII
Ga0315900_100136666	F011488	AGGA	MTNEELIEELYHKAHKKGFFNELHEKVSELKQTKQIKCGYEIVRVAYDELKKIKLAQPFPHL