Scaffold Ga0315900_10010713

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10010713
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11433
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F036674	Metagenome	169	Y
F056550	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100107134	F056550	N/A	VRICIVYHQRLGDIIRILPIARHLASQGHSVYVECFPQYWGLFGCVSYARPSDPKQRHEMRFSRVLELEIWPHRYDEYRASGKPWGDFVFGLFPEFAQLNQRPEFDLIDEQPPLEDYGFSREICLLAPFGYSQGKQHHAGKLMETCRRVANRPIVFLADEAQEAKLLTWRVPQSMILRAKSPAHLPRIIRDVEEVFTINSSPAIIAAAVRKEFWHVSSGVAQDDTFSPASRVVTVGD
Ga0315900_100107135	F036674	N/A	MAAVRDFDPVQLALDQGAILEQAGITFSYLGSTITGVWSSSRNLFDEFEDQRRDDVKFTVFFTTSSVTGRPAQSQTLVRAGTTYFVEQVRFDAEGAGCEIDVAKVI
Ga0315900_100107137	F014606	GAG	MSTRTDIRNAIGLKLTQAGVVPTANLLKGRNNTLVSTSFPSAAVYAVNEQVEVRTLSPANRTQYRTLQVMVEYFTAEVAGSTTIIDDLFDTGSAAVEAAVLADVTLGGVCDDLLLTSVDYVIEPDEERRWGVARHTFSCIYLTTD