Scaffold Ga0315900_10009597

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10009597
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12248
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060719	Metagenome	132	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1000959712	F060719	N/A	MNPKHLQINIQDEISADKLKLAYTKQANERSRYEMENKFSKSTGEAYQKYYVETKVFYTTANIGSDCNDITFINSGTTNLVIGEVPLLPNQSLRISGNRGEIDTTQYQLTFATPINTGNQLIVIRKLYI
Ga0315900_100095973	F085397	N/A	MSQRNKDLPAMPVHPMQDKFGQVILMAGMSKLEITALNILSAQLRKNNIEDISDEDITYIITQSYNIAEEFCAYMETKGEKESSIII