Scaffold Ga0315900

Basic Information
Taxon OID	3300031787 Open in IMG/M
Scaffold ID	Ga0315900_10009008 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031787 Open in IMG/M

Scaffold ID

Ga0315900_10009008 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12733
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12733

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F089880	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100090083	F075040	AGG	VDNNNPVHIKPMKETPKVKTESADKPAVQSSDLQREIYLRLISSAAADGRFLLGNLPNANAVVKQGDHLRGVSELLASCYEK
Ga0315900_100090085	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKIEFDQPSEEPTRVAKSATPIVTDNIQALDEIVEMHRYINSLVRHAYKDVEDEETLRSYVSSVFIEANRKGIRYAKSSAKAEEPKVEDTQDEPKSELDPADWASAIVPSGSQKGKKLAEIGKPALTKLYEYYLEKGFTTPFAKCVEQAAEDLSLDAPVEEDNIPY
Ga0315900_100090086	F089880	N/A	MKKKSELELFSPTQEGVLVPLSTYFRHMEEFARTEWPGVNITDNHIKKAWSKLQKNEYLGDDTPDEMLEMYERMSADLDMAKEMEEERQNADSYKPEPIKSDAPKNESLELVESVKNGLELSSFTQKFDIGQGMTQCVPKGKVEMKDWVAAFAFGLTLESGAQWIIGDSVVALENGGHEDVVNQLCSNFKKSYSTVSGYARACRAFPADKRDPVLPFTVYREIGNANFGDDKVNAKKQHELLEAAKTEKLSSTEVRNRVRHEQGKDDKPSGHRYLLLNVGNFSNSEVLRNMPEEVQEHQLLIDLSDKSWFDPAENQWIKFLKEQ
Ga0315900_100090087	F015061	AGGAG	MSEQTPQNETSKTIMEAFSFIKCEDEKLNERVHAMASLLHTASMMVVRSESRKGEGFEAIKYLELAFLYYKESQFRKRFDKEEEEEAPRIIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315900_10009008

Overview

Ecosystem & Geography

Associated Families

Sequences