Scaffold Ga0315900_10008538

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10008538
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13159
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008081	Metagenome / Metatranscriptome	339	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1000853817	F029443	N/A	MTLVDLVKKLKAIQEAHPMLRTFGEGDIYDYVDNGGEIQYPVLWTVVRPSVYSGTTMRYDLVLLFADLLTEDKSNRLQIQSDQMLVALDVLAKLKLDNDYTFNTAPNASVEFFQERFDDFTAGVSIAIQVTAPMPLNLCVIPTEA
Ga0315900_100085385	F008081	N/A	MEESEILNPFGYGKASKVMDENRKPAEWWVDYIQFNEVVAENEFYVLFADGFLIKKGRSKFRSSQYLVGDRFKSFKQCHEEGN
Ga0315900_100085388	F036704	N/A	MWIEIDVMLSGQTIDWKSLGLEVKHEWSRRMVRVGDIQYVQELMHDIQIMGFYDNTTCLIKGDYKEIRSEILHLDQETDLE