Scaffold Ga0315900_10008326

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10008326
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13363
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029418	Metagenome	188	Y
F034908	Metagenome	173	Y
F043777	Metagenome	155	Y
F066489	Metagenome	126	Y
F080877	Metagenome	114	Y
F082592	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1000832611	F066489	N/A	MLTMVFSSGCVSVATSVATQAGVQYTGEQYLISQKKPMIKCNVINVIKGNNMCRVSRTYLIRRV
Ga0315900_1000832620	F034908	AGGAGG	MTKFSVVVEVSMDDTYLKQVETWGVEPSDHIATILSEPLREKGLVVKASALEVEHTMFDRLKKYQEHLAQADAYNDIENEIIARACIGGKCDD
Ga0315900_1000832624	F029418	GAGG	MTPEEKKRKFEEDIIEVAVAEYYEYVDVHKRTRSEKDAKMFYDAMRLGVIRGINFATNQYIESLRKFEEAKKDE
Ga0315900_1000832626	F080877	GGA	MTELERDIDPPAPQEPLRIRSWWIGYRWEDGSEDTLHLEDHQRDAIDEIERTLDEVEYEVNRDILENQAYKYGDPDSDY
Ga0315900_1000832627	F043777	AGG	MKLINGTDIIDNSPNEKAGELAEAIFDDVVFILDLEDKCIAENEDGTYNTELGQDLFNCIYEQCMNYFERETT
Ga0315900_1000832631	F082592	GGAG	MIKYKGDVASIDNLEDALELFARHGIWVRITNKAKKDPYGQGLKEAFFKGKEDE