Scaffold Ga0315900_10004734

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10004734
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19029
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (23.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018327	Metagenome	235	Y
F029664	Metagenome / Metatranscriptome	187	Y
F031356	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100047344	F018327	N/A	MKYLFIILFILSSLTMNAQYIKVLPQAGLTSEQRAIAISRELFRIQRPINQQNDATLYLFGWIKHPTKDPNYIDTVNAALQIDTNQVIYVHPDNDLTNLIALLPELSQVEKDGLAAFIESQQMFLFKYIIPSDVTVFNIDQMKAGGWLPEDEDL
Ga0315900_100047347	F029664	N/A	MPEWLKRLTKTDIRNSIAIIVVIGCFLLMYLLQVKPIPEQNHDLVLTAGGFIFGGALAGVIGYYFGATKTDKKQDGEG
Ga0315900_100047348	F031356	AGAAG	MERDKEMHFWAGVTVSFFALITFKALDIAHTWIYVLAAVLTAAIGKELKDLMDYGKFDYRDAVYTIAGGMSGLVLSFF