Scaffold Ga0315900_10004592

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10004592
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19387
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.93%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F040160	Metagenome	162	N
F058252	Metagenome	135	N
F090571	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1000459212	F090571	AGGAGG	MTTDQAFAKASRFMEAALTIWESFDKERYCIADNYWSEGMKIYHEYFSETKVLTETQDIDSLLP
Ga0315900_1000459217	F058252	GGA	MTTNNTFEARVICEGTEVDENQYKILFRQKFNQCWVPKKEIRLKETLGHLYGEKIIRIVIPEELANTLELEGIMD
Ga0315900_1000459218	F023326	N/A	MSRDFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKEYCNKHNINLSDFKLLSPHEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDVCLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCAAVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPKGASNFDSVNPEMDKWETGTGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNANTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMYLESQKIIQLSANAAAEFEIQLATEVVNYCRSAGVQPAKFGMDVSGDGGRVGQAIIREWLRFDSTGSGIALISSMGKPTERIAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVLYGVDTSSDLARELCLRRYTIKSKKISVETKDDFKGRTGFSPDLADSYLYCLEMARRYGLVFIGNDKVVPTNRFWAREEKPVEVFSDDDAYSSDDNGDW
Ga0315900_1000459219	F021128	AGG	MKLKNKNLAPVGGWYWRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYNSNGIQVPANIEQMVEDQICQRQPSDRCWYSDGIGDKIAQVIHTVAKTTDKVLGTKLEHKARGCSSCNRRRNALNSLS
Ga0315900_1000459221	F040160	N/A	MTTEKVKSLCAAITAHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIDAIGTEEQGAFKKTKPSSRTKEPKESSIDPDLDEI
Ga0315900_1000459223	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRTITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGVTTDDGTYCGLVDDQSWFVPEHTVNNEAGYDLCALRVKIAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNAGLAPFNEADPATWARLVRVPRYIKTVMEQGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCEVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0315900_1000459225	F027487	N/A	MACFTGLPYRDKTYPFVQTIAAAAGIEPTSFGCYDMSSDASKLYQFYVGLATIGGLTPVTENCFVQKTEDQQYFITNEALAAALNPS
Ga0315900_1000459226	F017989	N/A	MALTQSCFTDLTEDQQNYNIYESLKEVAGFEIPAYDQIDISYYGSTNNIATVQYLKDGTPVATLTLTYAVQPPVANDANLTTVSVAYP