Scaffold Ga0315900_10004313

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10004313
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20136
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F006660	Metagenome	367	Y
F022651	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1000431311	F022651	AGAAG	VTTIKNTNDLLTFLESQAALRQDWFGHKQQRMTAITLAHEIAARHADKMSPEDVVDYAMELNQRIFDKIIDPTRQGKK
Ga0315900_1000431316	F006660	GGAG	MSFQTIVDIQQSMTVQNRRMVGQQVTRGGQIRTAQYLNAVPWVFTIVPHNYLYYPQVRDVIQTIDNLDRQLPANITFSSTNLQWFTAYQGGLSLVQAAALTLASVPPANSQTITVGNLPAVGSTVVVFAAGDFLQLGSYVYKVTQQVLRGSGSTVSVNLHRPVIGTPSVGTLTAVGKDVYFPVYAEVCPTYSLTPMTNGAFVNWDQPFVFRENVAP
Ga0315900_100043136	F002997	N/A	MAIARFENITVNSLTFAKSDFGEQTTTITKWFGTRARIADVANSLKISDRYRLYQDLVQMTLNYTPNVKHIVDRQDLYSFNWRGHDWRITDCREANDRMSVTFMCYRNDPVVAV