Scaffold Ga0315900_10004054

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10004054
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20890
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (19.51%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030766	Metagenome / Metatranscriptome	184	Y
F041189	Metagenome / Metatranscriptome	160	Y
F078724	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1000405426	F078724	GAG	MIDSLYTKYFQKSRCFLFPILGIKKSSNFSPSGIYISVEGVVQPEDLKLVCAYKTDVSEGFKIFEKTMLLDNPHFERVLKIRDYNIYVFDFQKHSQDWFQFIMGKYSKLSSITKRAIKTHYGENSSEYKYVDSWLYPEKYYEVYAKLLDVDVSTLKGIGELCDPCDLEKETLKIPVEDLEILQKTT
Ga0315900_1000405433	F041189	N/A	MFSTQGQEVKTGGTSKSLQAGVVYAHINSGQLRTSSKGDKKVLELYLEGPELDNFEGWPISKDNPEGPKHKGQTARVAATIWTDEFNNPNVSRNEIMYKLSIIATELGLRDQLNQIQANSIEEWVSKVLNLVEGKKMYWFLKGTEEEYNGKTIIKLSLPKYKFASVDETKLDKFDKNNKYHYKALVTKPVSSFEPATDDFDM
Ga0315900_1000405439	F030766	N/A	MMTKKFYAQKDALGWPIPSTMMSGTKVPANLIEIPAQDVTAGAGETVIIHPSKLRYFVRKDEKGNIIPNSLIISLKKPAGNVYEFKLVKAS