NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315900_10002534

Scaffold Ga0315900_10002534


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10002534 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27705
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F028489Metagenome / Metatranscriptome191Y
F096923Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1000253436F096923N/AMIMKTIGIVLLWFVFIGILASFVSCASGHQCDAYGQTEQVENRTVSK
Ga0315900_1000253443F000716N/AMYKMEKLKQQVRNYQLNAGKTYMQYESDGYSQYQNYLYKRALYGLNALTKEELDTMCSKKKQRILNVYKRAQRVLNVFKQQVTNQYSNYIFQTLFPKSPWTEAMVAYSEVDEKYTNTLTFKDLNIGKSDIISIFMSEGILPKNFLSLQEAPVTLPRLKNEAKA
Ga0315900_1000253445F028489N/AMIMKMIGRELKLKLANDYSKFAVLPMNRGIDSKHVQKMIASLRLQGCVRVVQCCRTNIIEGEEKLYIIDGQHLATALEREGQPIPYIETEVTSEEDLIEKMAYLNNSSKSWDLMNFINAWKMIRPDYMKLFKWKNMYDIEITMLAAIGINNAGIRNTTASIKTGNFQITNSKAEEMCKAFNDIFLKIGMSDRSVKFQFLAAFLQAYGTYNHTKVMSNIEKHMKTVKLLTDGDSTGTYIRTKIFNLPK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.