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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031787 Open in IMG/M |
| Scaffold ID | Ga0315900_10000498 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 68654 |
| Total Scaffold Genes | 97 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (42.27%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045693 | Metagenome / Metatranscriptome | 152 | Y |
| F074772 | Metagenome / Metatranscriptome | 119 | Y |
| F093741 | Metagenome / Metatranscriptome | 106 | Y |
| F095349 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315900_1000049812 | F095349 | N/A | MSAQTATTCEAISDQFQRETGRIALGTHRLGLYKDPYLRFVTQSAFPDNMGKTITNTIAQRTVATGSGWEEIGVTGESGQDNSCLAPVKKVGYAFDQKTFSLRHQAIESDWICLEDVRTSAFPIDDVNNYIKILADNVNKEWIERYDNDYYAAVTKVSVEPGLAESTGSSFGSLPNPTSVLTIGVLRELYDRLYQNNAGDDGDAVTDDGSPVFNVFAERATIENLIKLNDDVRQDIRWSDRVNDLLGANGSSLLPRKAYGGFVFHSRPFPKRFNDNGSGGYVEVAPYIATSGATKGTKFIINPAYKAAKYTSTVIFHPKAVEWLVPNPNLKVGKLVYDAQNYRGDFRWINEYDKNCNPDKNSGYWRAKMACAAKQIFPEFGFYILHLRCNLANDLVACPSGSGYGYLV |
| Ga0315900_1000049814 | F074772 | AGGA | MEWTDQDAREWAKTWAMPNMQKGLKFISKRVRPKRSSSPVAQGFDLSPVFIKSAGFYEGSQEVMDLIDTLGQGQVNKPKFDLPEPFSHITSEEQNQ |
| Ga0315900_1000049842 | F093741 | AGTAG | MTQSQFDADLKVAYDDTGVLMPFPEQEEGFCDNPIRMLFEQVEETDVEEE |
| Ga0315900_100004987 | F045693 | GGA | MKDKILAFLVSKAGGVITPLVAMGVAAIVSKLAMIDPTLAESVDQVSLTGFIVALILAIVNYITNEVQSKGVKQIQALVNTTQDGIVGPITYTEVRRAIKVPKMPKPVRRKKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |