NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315908_10430595

Scaffold Ga0315908_10430595


Overview

Basic Information
Taxon OID3300031786 Open in IMG/M
Scaffold IDGa0315908_10430595 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1103
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037080Metagenome / Metatranscriptome168Y
F086623Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0315908_104305951F086623N/ADLPRAVTDAMTAVLASGSVYQYWFPSYTSFMGQPVTGNKTGTTRISLSTSSLEMLIGTFMVQNRDTQTQPIIGDYGARADALSAQNMGELGDASKTFRYNLLSCEPIIFNQSKYFIRNGTTLKQCRWGIGNVYFNYETIPEQFSNVLRAFNTQNDTLGGFHEGLTGLSAFQDTYYSHILTLNASGENDVYTVSGLDASTLPTQISWEYVGGDDATNATFTDIYGTNNTIHTPLIIAVYSSHLDIMANRQIITRV
Ga0315908_104305952F037080N/AMNEYIYKSFSDKFDSQKLRHDLLSDIRYPNDINYAVRDPTNINGHVELRYVQNIYDNFERNPYLENMNPAARVPYCKPYWSDKEPNNFGYPISLTQLG
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