Scaffold Ga0315908_10352535

Overview

Basic Information

• Taxon OID: 3300031786
• Scaffold ID: Ga0315908_10352535
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F038673	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315908_103525352	F038673	GAGG	MGWKIYTKRSGILTSSLKPKKNNRQKVLLCRMWFLLFLIPLTSNGQVLIDTCVIQEANHYLVKGAIARRQVTILRKIVTSDSIIIDQQDSIIGKQKTNIGYLKDDNNALVKRNKAISRTLISYKMLSVVLTILSVAMWLK
Ga0315908_103525353	F002909	N/A	VAQIDISKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFAPGNITKSPTSINTILVAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKPAEGQTYDSLAKAIAKKIHRSGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI