Scaffold Ga0315908_10201593

Overview

Basic Information

• Taxon OID: 3300031786
• Scaffold ID: Ga0315908_10201593
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1650
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032962	Metagenome / Metatranscriptome	178	Y
F056345	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315908_102015934	F056345	AGGA	MVFVLNRQRGISLATGIERDLNQCQIRVGGKLVGYLHFGETPQILAIFEFPHDYLTAEEIASLEKQLEAIQGYPAKVQPPEQVSRSFVKAALEAIEQAKGEEDDE
Ga0315908_102015935	F032962	AGGAG	MPALTVADTGLGASISGTGLITTQVVSIGEMTIGVDVLNISDLSTVGFELERPGDLRKNPDCEIAFNWLGAAIPITTAMIPTAEPYAGIASVITFPGAGSLQGTAFVKQAKTPKLAKGEVMRGSYTLQFDGATDITFTPA