NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315908_10034492

Scaffold Ga0315908_10034492


Overview

Basic Information
Taxon OID3300031786 Open in IMG/M
Scaffold IDGa0315908_10034492 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3809
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015204Metagenome / Metatranscriptome256Y
F033010Metagenome / Metatranscriptome178Y
F038210Metagenome / Metatranscriptome166N
F046910Metagenome / Metatranscriptome150Y
F065707Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0315908_100344922F015204AGGAGGMNFEDWWSQLTKFEQRAIGEHNAKFVWEECQKYTLMTLEDACKAQVAYDQGMKDGKERYEVHVAGWVLTPGMQPGMIWISDAGGEGGDFHIHELAEVIGKFYREKF
Ga0315908_100344925F065707GAGGMRPAIFSTENPPQPITCVETLEYVNGLRRRIEVQNDQMEQLAAQSHMLLGKVQHLTGEIEKLSLDLGIKNQETGPGWQKVDQ
Ga0315908_100344926F046910AGAAGGVTPSLQEIVEALGPRQLVQVVILTAGGQKYALIGPLMTCADVTEIEFGELMPMHVAAKMLSGDHKEWLGTGLQ
Ga0315908_100344927F038210N/ALTSFALVVALGVDLLHNVGMKIEKNIPLPGGVDPRERYPFPDMALGDSFMILDATWIKNLRSAAYMYSKRHPGTRFTCRRHGEGWRLWRVA
Ga0315908_100344929F033010N/AMFVMVELKVVKRGRKVNLSPHQVAFHIKHADLRCPTYILVQYQPAGTAHASKSELLLFCGEQAIDLANLGVDTPALARWPWTGVSWSELRKHLVDS
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